> For the complete documentation index, see [llms.txt](https://lulab1.gitbook.io/training/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://lulab1.gitbook.io/training/archive.md).

# Archive

- [Archive 2021](https://lulab1.gitbook.io/training/archive/archive2021.md)
- [cfDNA Methylation](https://lulab1.gitbook.io/training/archive/archive2021/cfdnamet.md)
- [Genomic Annotation](https://lulab1.gitbook.io/training/archive/archive2021/annot.md)
- [Archive 2019 - Wetlab Training](https://lulab1.gitbook.io/training/archive/wetlab_training.md)
- [Class I. Basics](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics.md)
- [1. Wet Lab Safety](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/wetlab_safety.md): 实验室安全指南
- [2. Wet Lab Regulation](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/wetlab_regulation.md)
- [3. Wet Lab Protocols](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/wet-lab-protocols.md)
- [4. How to design sample cohort](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/4.how-to-design-sample-cohort.md)
- [5. How to collect and manage samples](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/5.-how-to-collect-and-manage-samples.md)
- [6. How to purify RNA from blood](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/6.-how-to-purify-rna-from-blood.md)
- [7. How to check the quantity and quality of RNA](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/7.-how-to-check-the-quantity-and-quality-of-rna.md)
- [8. RNA storage](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/8.-rna-storage.md)
- [9. How to remove DNA contanimation](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/9.-how-to-remove-dna-contanimation.md)
- [10. What is Spike-in](https://lulab1.gitbook.io/training/archive/wetlab_training/class-1_basics/10.-what-is-spike-in.md)
- [Class II. NGS - I](https://lulab1.gitbook.io/training/archive/wetlab_training/class-2_ngs-i.md)
- [1. How to do RNA-seq](https://lulab1.gitbook.io/training/archive/wetlab_training/class-2_ngs-i/how-to-do-rna-seq.md)
- [2. How to check the quantity and quality of RNA-seq library](https://lulab1.gitbook.io/training/archive/wetlab_training/class-2_ngs-i/how-to-check-the-quantity-and-quality-of-rna-seq-library.md)
- [3. What is SMART-seq2 and Multiplex](https://lulab1.gitbook.io/training/archive/wetlab_training/class-2_ngs-i/what-is-smart-seq2-and-multiplex.md)
- [Archive 2019 - Drylab Training](https://lulab1.gitbook.io/training/archive/archive-2019.md)
- [Getting Startted](https://lulab1.gitbook.io/training/archive/archive-2019/getting-startted.md)
- [Part I. Programming Skills](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills.md)
- [Introduction of PART I](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/introduction-of-part-i.md)
- [1.Setup](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/1.setup.md)
- [2.Linux](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/2.linux.md)
- [3.Bash and Github](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/3.bash-and-github.md)
- [4.R](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/4.r.md)
- [5.Python](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/5.python_basics.md)
- [6.Perl](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/6.perl.md)
- [Conclusion of PART I](https://lulab1.gitbook.io/training/archive/archive-2019/part-i.-programming-skills/conclusion-of-part-i.md)
- [Part II. Machine Learning Skills](https://lulab1.gitbook.io/training/archive/archive-2019/part-ii.-machine-learning-skills.md)
- [1.Machine Learning](https://lulab1.gitbook.io/training/archive/archive-2019/part-ii.-machine-learning-skills/1.machine-learning-basics.md)
- [2.Feature Selection](https://lulab1.gitbook.io/training/archive/archive-2019/part-ii.-machine-learning-skills/2.feature-selection.md)
- [3.Machine Learning Practice](https://lulab1.gitbook.io/training/archive/archive-2019/part-ii.-machine-learning-skills/4.machine_learning_practice.md)
- [4.Deep Learning](https://lulab1.gitbook.io/training/archive/archive-2019/part-ii.-machine-learning-skills/3.deep-learning-basics.md)
- [Part III. Case studies](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies.md)
- [Case Study 1. exRNA-seq](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-1.exrna-seq.md)
- [1.1 Mapping, Annotation and QC](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-1.exrna-seq/1.1.mapping-annotation-and-qc.md)
- [1.2 Expression Matrix](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-1.exrna-seq/1.2.expression-matrix.md)
- [1.3.Differential Expression](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-1.exrna-seq/1.3.differential-expression.md): Differential Expression for bulk RNAs
- [1.4 Normalization Issues](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-1.exrna-seq/1.4.normalization-issues.md)
- [Case Study 2. exSEEK](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-2.exseek.md)
- [2.1 Plot Utilities](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-2.exseek/2.1-plot-utilities.md)
- [2.2 Matrix Processing](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-2.exseek/2.2.normalization.md)
- [2.3 Feature Selection](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-2.exseek/2.2.feature-selection.md)
- [Case Study 3. DeepSHAPE](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-3.deepshape.md)
- [3.1 Background](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-3.deepshape/3.1-background.md)
- [3.2 Resources](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-3.deepshape/3.2-resources.md)
- [3.3 Literature](https://lulab1.gitbook.io/training/archive/archive-2019/part-iii.-case-studies/case-study-3.deepshape/3.3-literature.md)
- [Part IV. Appendix](https://lulab1.gitbook.io/training/archive/archive-2019/part-iv.-appendix.md)
- [Appendix I. Keep Learning](https://lulab1.gitbook.io/training/archive/archive-2019/part-iv.-appendix/appendix-i.keep-learning.md)
- [Appendix II. Public Data](https://lulab1.gitbook.io/training/archive/archive-2019/part-iv.-appendix/appendix-ii.public-data.md)
- [Appendix III. Mapping Protocol of RNA-seq](https://lulab1.gitbook.io/training/archive/archive-2019/part-iv.-appendix/appendix-iii.mapping-protocol-of-rna-seqnd-mapping-protocol.md)
- [Appendix IV. Useful tools for bioinformatics](https://lulab1.gitbook.io/training/archive/archive-2019/part-iv.-appendix/appendix-iv.useful-tools-for-bioinformatics.md)
- [Part V. Software](https://lulab1.gitbook.io/training/archive/archive-2019/part-v.-software.md)
- [I. Docker Manual](https://lulab1.gitbook.io/training/archive/archive-2019/part-v.-software/i.docker-manual.md)
- [II. Local Gitbook Builder](https://lulab1.gitbook.io/training/archive/archive-2019/part-v.-software/ii.-local-gitbook-builder.md): Contributed by Xupeng Chen
- [III. Teaching Materials](https://lulab1.gitbook.io/training/archive/archive-2019/part-v.-software/iii.-teaching-materials.md)