> For the complete documentation index, see [llms.txt](https://lulab1.gitbook.io/training/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://lulab1.gitbook.io/training/drylab-training/genomics.md).

# Genomics

## Shared Genome Data in Lu Lab

| species     | version | local dir                                  | Notes               | Person     | Download Date | Download Link                                                                                         | Github Link                                                                                                               |
| ----------- | ------- | ------------------------------------------ | ------------------- | ---------- | ------------- | ----------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------- |
| Human       | hg38    | /BioII/lulab\_b/shared/genomes/hg38        | sequence,anno,index | Binbin Shi | 2018.11.28    | [hg38](http://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz)                             | [hg38](https://github.com/lulab/intranet/tree/e07d6f9fe0e5dce4718cbc6ada176123df3e35ed/drylab_data/genome-hg38/README.md) |
| Mouse       | mm10    | /BioII/lulab\_b/shared/genomes/mouse\_mm10 | sequence,anno,index | Yumin      | 2019.04       | [Gencode](ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M18/GRCm38.p6.genome.fa.gz) |                                                                                                                           |
| Arabidopsis | TAIR10  | /BioII/lulab\_b/shared/genomes/Ath\_TAIR10 | sequence,anno,index | Yumin      | 2018.6.2      | [TAIR](ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/)                              |                                                                                                                           |

```
 /Bio_II/lulab_b/shared/shared_scripts/  
 /Bio_II/lulab_b/shared/genomes/         #fasta and gtf/gff etc
 /Bio_II/lulab_b/shared/projects         #raw data and metadata
```